[PDF][PDF] Structural basis of m7GpppG binding to poly (A)-specific ribonuclease

M Wu, P Nilsson, N Henriksson, A Niedzwiecka… - Structure, 2009 - cell.com
M Wu, P Nilsson, N Henriksson, A Niedzwiecka, MK Lim, Z Cheng, K Kokkoris, A Virtanen…
Structure, 2009cell.com
Summary Poly (A)-specific ribonuclease (PARN) is a homodimeric, processive, and cap-
interacting 3′ exoribonuclease that efficiently degrades eukaryotic mRNA poly (A) tails. The
crystal structure of a C-terminally truncated PARN in complex with m 7 GpppG reveals that,
in one subunit, m 7 GpppG binds to a cavity formed by the RRM domain and the nuclease
domain, whereas in the other subunit, it binds almost exclusively to the RRM domain.
Importantly, our structural and competition data show that the cap-binding site overlaps with …
Summary
Poly(A)-specific ribonuclease (PARN) is a homodimeric, processive, and cap-interacting 3′ exoribonuclease that efficiently degrades eukaryotic mRNA poly(A) tails. The crystal structure of a C-terminally truncated PARN in complex with m7GpppG reveals that, in one subunit, m7GpppG binds to a cavity formed by the RRM domain and the nuclease domain, whereas in the other subunit, it binds almost exclusively to the RRM domain. Importantly, our structural and competition data show that the cap-binding site overlaps with the active site in the nuclease domain. Mutational analysis demonstrates that residues involved in m7G recognition are crucial for cap-stimulated deadenylation activity, and those involved in both cap and poly(A) binding are important for catalysis. A modeled PARN, which shows that the RRM domain from one subunit and the R3H domain from the other subunit enclose the active site, provides a structural foundation for further studies to elucidate the mechanism of PARN-mediated deadenylation.
cell.com